Using the POP3 option for email will cause slight confusion for you between PC and iPhone. Emails are not "synced" between the 2 devices.
If you are using Yahoo's push mail service or an IMAP account, they generally sync up as you access the folders (folders are another advantange of IMAP).
As Tinman posted somewhere on here, it isn't 100%, but still a far cry from the POP configuration.
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